PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595822.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 325aa    MW: 34987.8 Da    PI: 7.4258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_013595822.1 13 KGPWSPEEDDLLQSLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP

2Myb_DNA-binding54.92e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tI+r ++ gRt++ +k++w++ 
   XP_013595822.1  67 AFTAEEDETIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.679863IPR017930Myb domain
SuperFamilySSF466891.54E-3110106IPR009057Homeodomain-like
SMARTSM007173.4E-171261IPR001005SANT/Myb domain
PfamPF002491.7E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-261466IPR009057Homeodomain-like
CDDcd001672.49E-161557No hitNo description
SMARTSM007171.7E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.47565114IPR017930Myb domain
PfamPF002499.1E-1567109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2267113IPR009057Homeodomain-like
CDDcd001679.67E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSGPSRKNME RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRAFTA EEDETIIRAH ARFGNKWATI SRLLNGRTDN AIKNHWNSTL KRKCSGFTSE  120
GQSCDFGGNG GYDGNLGEEQ PLKRTASGGG VSTGLYMSPG SPSGSDVSEQ SSGAPHVFKP  180
TARSAAVTEV TASTSGEDPP TYLSLSLPWN NRCETETVRV NEPTQVNENT VTDGGYTAEL  240
FPVRKEEEKG ISGFGGEFMT VVQEMIRTEV RSYMADLQRG NVGGGGSSGG SGGGGGGSCM  300
PQSVNSRRVG FREFIVNQIG IGKME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40101131104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667420.0KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595822.10.0PREDICTED: transcription factor MYB44
SwissprotQ9FDW11e-96MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D3A1B40.0A0A0D3A1B4_BRAOL; Uncharacterized protein
STRINGBra011749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.10.0myb domain protein 73